PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074655.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 1012aa    MW: 112083 Da    PI: 5.0717
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       + ++++ ++l+++d++ ++W +++iyr++++r++lt+GW+ Fv a++L++gD v+F   ++++
  XP_011074655.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySTQPPT-QELVVRDLHDNTWAFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEK 237
                     99*********************999****98444444.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r 
  XP_011074655.1 238 SQLMLGVRRV 247
                     7789999985 PP

2Auxin_resp119.42.8e-39272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++ka++ +++++GmRf m+fete+ss+rr++Gt++g+sd+dp+rWpnSkWrsL+
  XP_011074655.1 272 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYgTQLAIGMRFGMMFETEESSKRRYMGTIIGISDVDPLRWPNSKWRSLQ 355
                     79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-47133275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40139260IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-21145246No hitNo description
PfamPF023625.2E-21146247IPR003340B3 DNA binding domain
SMARTSM010192.1E-22146248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957146248IPR003340B3 DNA binding domain
PfamPF065074.3E-34272355IPR010525Auxin response factor
PfamPF023092.9E-8893980IPR033389AUX/IAA domain
PROSITE profilePS5174525.774894977IPR000270PB1 domain
SuperFamilySSF542771.31E-8913972No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MGSVEEKLKP GGLISGAHNI LEGMKLLKEM QDHTGVKKQI NSELWHACAG PLVTLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATTQVPNYPN LPSQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVNSEKDIFP IPDFGLKHSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPQLDYSTQ  180
PPTQELVVRD LHDNTWAFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDAV LFIRDEKSQL  240
MLGVRRVNRQ QTTLPSSVLS ADSMHIGILA AAAHAAANRS PFTIFYNPRA CPSEFVIPLA  300
KYRKAVYGTQ LAIGMRFGMM FETEESSKRR YMGTIIGISD VDPLRWPNSK WRSLQVEWDE  360
PGCIDKQNRV SPWEIETPES LFIFPSLAAT LKRPFHTAFV GAQPEWETML NRPFLRVPDN  420
SLGDLQCPPI SSLWSEQLMK MLTKPPGLIA PGSIAYSMQE VKDVVPREAT SVMQPAMKQR  480
PELILQDVYP QGESNLQSVA GQPIITNPHI LAGSDLSKQE PVLTTDQLIQ FQSESQLNEE  540
RMPVKPLNPH NLINDFAVTN QHNGTVSLQT SSCITQSRLD SHALPAGKLT SAEAGSELSK  600
QEPVLATDQL SQFESEMQLN EKSMPVRPVN PQNVINDFAV TNQNNGMPAL HTSPYISHSR  660
LDPHILQTQQ IDPSQVTSAS ANDLPQYSSQ VEFNSYSSIY PPPSGSLRNP RPPSMLQKSD  720
QLSTSSDIVY PMLPSVEQEL WDPHYNDAKC VSQTNLPVLL PHQDMSNLQY SSCGLKDVSD  780
EENNQSDLYS CVNLDGSNSG STVIDPSVSS TILDDFCTLK NVDFSNPSDY FVGNFCSTQD  840
VQSQITSASL ADSQNFSLQE YADNSGGASS SNIDYDDNNL LQQSSFQQVT PRFRTYTKIQ  900
KAGSVGRSID VSGFRNYKEL LSEIECMFGL TGLLNDSGSG WKLVYVDFEN DVLLVGDDPW  960
EEFVGCVRCI RILSPSEVKQ MGEEGMQLLN SVGMQGVNGS TLEVGCAKDG SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013805392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074654.10.0PREDICTED: auxin response factor 5-like
RefseqXP_011074655.10.0PREDICTED: auxin response factor 5-like
RefseqXP_011074656.10.0PREDICTED: auxin response factor 5-like
RefseqXP_011074657.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A068UFS90.0A0A068UFS9_COFCA; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein